PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0482s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 271aa    MW: 31122 Da    PI: 9.8324
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0482s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM79.95.7e-25531802128
                     NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkyatgkrk.nratksgyWka 85 
                             p+G rF+P+d el+++yL++k  g    +e ++ ++d+yk++P+++p  kv+ + + ++y F++  k + +g++k +r t +g Wk 
  SapurV1A.0482s0030.1.p  53 PVGWRFNPSDIELLDYYLRAKKYGGGPICEGIFGDFDLYKYDPQNIPqDKVHRHCNgRMYIFTPIYKLHINGSKKgKRNTPNGHWKM 139
                             79*****************9988888677689***************546655555588********99998766156********* PP

                     NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               +  +v+++ +g+++g++ +L+f++g+++k   t+W+m e+rl
  SapurV1A.0482s0030.1.p 140 NSSPIPVIENnDGQTIGTRSSLAFFDGHKRK---TRWLMYEFRL 180
                             ******999878999**********877765...********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-2651186IPR003441NAC domain
PROSITE profilePS5100530.92152202IPR003441NAC domain
PfamPF023655.0E-1553180IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MSTPISKTSW RTSWDADRAL QAAAEPRHQD QIREAFRSLS ASAKLMDWSK FGPVGWRFNP  60
SDIELLDYYL RAKKYGGGPI CEGIFGDFDL YKYDPQNIPQ DKVHRHCNGR MYIFTPIYKL  120
HINGSKKGKR NTPNGHWKMN SSPIPVIENN DGQTIGTRSS LAFFDGHKRK TRWLMYEFRL  180
VDPPTQADEN QGMWFIGRKN TEYWTIIGNN YVERTLGSDE FNSKPKRCHS LVLFDNTGNY  240
SMEQSHKKLK YARDIGGIST SNSNSITSIF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-165318016140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308423.11e-149hypothetical protein POPTR_0006s19350g
TrEMBLB9HBF61e-149B9HBF6_POPTR; Uncharacterized protein
STRINGPOPTR_0006s19350.11e-148(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2320334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.16e-18NAC domain containing protein 61